diff -r fda76d0c4b84 -r 7a73b8b4ac8a make/common/NativeCompilation.gmk
--- a/make/common/NativeCompilation.gmk	Thu Apr 12 02:54:38 2018 -0700
+++ b/make/common/NativeCompilation.gmk	Mon Apr 16 00:48:00 2018 -0700
@@ -372,6 +372,10 @@
     $$(error Unknown value for OPTIMIZATION: $$($1_OPTIMIZATION))
   endif
 
+  # Add sys root specific cflags last
+  $1_EXTRA_CFLAGS += $(SYSROOT_CFLAGS)
+  $1_EXTRA_CXXFLAGS += $(SYSROOT_CFLAGS)
+
   # Now call add_native_source for each source file we are going to compile.
   $$(foreach p,$$($1_SRCS), \
       $$(eval $$(call add_native_source,$1,$$p,$$($1_OBJECT_DIR), \
@@ -417,6 +421,8 @@
     $1_EXTRA_LDFLAGS += $(call SET_SHARED_LIBRARY_MAPFILE,$$($1_REAL_MAPFILE))
   endif
 
+  $1_EXTRA_LDFLAGS += $(SYSROOT_LDFLAGS)
+
   $1 := $$($1_TARGET)
   ifneq (,$$($1_LIBRARY))
     # Generating a dynamic library.